Applied Parallel Computing

Application's MPI Communication.- Parallel Methods for Real-Time Visualization of Snow.- Support for Collaboration, Visualization and Monitoring of Parallel Applications Using Shared Windows.- Tools, Frameworks and Applications for High Performance Computing: Minisymposium Abstract.- Multi-level ?-Finite Element Analysis for Human Bone Structures.- High-Level User Interfaces for the DOE ACTS Collection.- High-Performance Graph Algorithms from Parallel Sparse Matrices.- A Python Module for PDE-Based Numerical Modelling.- COMODI: Architecture for a Component-Based Scientific Computing System.- Workload Characterization Using the TAU Performance System.- Grid Data Management: Minisymposium Abstract.- Supporting SLA Negotiation for QoS-Enabled Simulation Services in a Medical Grid Environment.- A Transparent Grid Filesystem.- Grid Data Integration Based on Schema Mapping.- Simulations in Geophysics and Space Physics: Minisymposium Abstract.- Parallelization of a Public Image Restoration Algorithm.- Visualizing Katrina - Merging Computer Simulations with Observations.- Generation of Microlensing Magnification Patterns with High Performance Computing Techniques.- Phase Space Modulations in Magnetised Plasmas by a Mildly Relativistic Two-Stream Instability.- Implementing a Particle-Fluid Model of Auroral Electrons.- Tools for Parallel Performance Analysis: Minisymposium Abstract.- Automatic Tuning in Computational Grids.- Automated Performance Analysis Using ASL Performance Properties.- A Parallel Trace-Data Interface for Scalable Performance Analysis.- Search of Performance Inefficiencies in Message Passing Applications with KappaPI 2 Tool.- Automatic Monitoring of Memory Hierarchies in Threaded Applications with AMEBA.- Visualization of Repetitive Patterns in Event Traces.- Optimization of Instrumentation in Parallel Performance Evaluation Tools.- GASP! A Standardized Performance Analysis Tool Interface for Global Address Space Programming Models.- Integrated Runtime Measurement Summarisation and Selective Event Tracing for Scalable Parallel Execution Performance Diagnosis.- Grids for Scientific Computing: Minisymposium Abstract.- Roadmap for the ARC Grid Middleware.- Data Management for the World's Largest Machine.- Meta-computations on the CLUSTERIX Grid.- Simulations of Materials: Minisymposium Abstract.- Ab Initio Calculations of the Electronic Structure and Magnetism of Iron Porphyrin-Type Molecules: A Benchmarking Study.- Mechanical Properties of Random Alloys from Quantum Mechanical Simulations.- Novel Data Formats and Algorithms for Dense Linear Algebra Computations: Minisymposium Abstract.- Cache Oblivious Matrix Operations Using Peano Curves.- Recursive Blocked Algorithms for Solving Periodic Triangular Sylvester-Type Matrix Equations.- Minimal Data Copy for Dense Linear Algebra Factorization.- Three Algorithms for Cholesky Factorization on Distributed Memory Using Packed Storage.- In-Place Transposition of Rectangular Matrices.- Rectangular Full Packed Format for LAPACK Algorithms Timings on Several Computers.- Using Non-canonical Array Layouts in Dense Matrix Operations.- New Data Distribution for Solving Triangular Systems on Distributed Memory Machines.- The Design of a New Out-of-Core Multifrontal Solver.- Cholesky Factorization of Band Matrices Using Multithreaded BLAS.- A Master-Worker Type Eigensolver for Molecular Orbital Computations.- Bioinformatics and Computational Biology: Minisymposium Abstract.- Using Parallel Computing and Grid Systems for Genetic Mapping of Quantitative Traits.- Partial Approximation of the Master Equation by the Fokker-Planck Equation.- Design, Construction and Use of the FISH Server.- Scientific Visualization and HPC Applications: Minisymposium Abstract.- Interactive Volume Visualization of Fluid Flow Simulation Data.- Software Tools for Parallel CFD Applications: Minisymposium Abstract.- The Iterative Solver Template Library.- EulFS: A Parallel CFD Code for the Simulation of Euler and Navier-Stokes Problems on Unstructured Grids.- Making Hybrid Tsunami Simulators in a Parallel Software Framework.- HPC-MW: A Problem Solving Environment for Developing Parallel FEM Applications.- SyFi - An Element Matrix Factory.- Life: Overview of a Unified C++ Implementation of the Finite and Spectral Element Methods in 1D, 2D and 3D.- Parallel Program Complex for 3D Unsteady Flow Simulation.- Multi-scale Physics: Minisymposium Abstract.- Simulation of Multiphysics Problems Using Adaptive Finite Elements.- Contributed Papers.- A New Domain Decomposition Approach Suited for Grid Computing.- Parallelization of the Mesh Refinement Algorithm of the FDEM Program Package.- Load Balancing for the Numerical Solution of the Navier-Stokes Equations.- A Method of Adaptive Coarsening for Compressing Scientific Datasets.- A Computational Framework for Topological Operations.- Applications of Grid Computing in Genetics and Proteomics.- Grid Enabling Your Data Resources with OGSA-DAI.- UniGrids Streaming Framework: Enabling Streaming for the New Generation of Grids.- Dynamic Clusters Available Under Clusterix Grid.- Agent-Based Societies for the Sharing, Brokerage and Allocation of Grid Resources.- OpusIB - Grid Enabled Opteron Cluster with InfiniBand Interconnect.- Extending the HPC-ICTM Geographical Categorization Model for Grid Computing.- Distributed SILC: An Easy-to-Use Interface for MPI-Based Parallel Matrix Computation Libraries.- A Study of Real World I/O Performance in Parallel Scientific Computing.- Epitaxial Surface Growth with Local Interaction, Parallel and Non-parallel Simulations.- Data Dependence Analysis for the Parallelization of Numerical Tree Codes.- Efficient Assembly of Sparse Matrices Using Hashing.- A Web-Site-Based Partitioning Technique for Reducing Preprocessing Overhead of Parallel PageRank Computation.- Is Cache-Oblivious DGEMM Viable?.- Partitioning and Blocking Issues for a Parallel Incomplete Factorization.- Automatic Performance Tuning for the Multi-section with Multiple Eigenvalues Method for Symmetric Tridiagonal Eigenproblems.- Optimizing a Parallel Self-verified Method for Solving Linear Systems.- A Parallel Block Iterative Method for Interactive Contacting Rigid Multibody Simulations on Multicore PCs.- PyTrilinos: High-Performance Distributed-Memory Solvers for Python.- Amesos: A Set of General Interfaces to Sparse Direct Solver Libraries.- d-Spline Based Incremental Parameter Estimation in Automatic Performance Tuning.- A High Performance Generic Scientific Simulation Environment.- NestStepModelica - Mathematical Modeling and Bulk-Synchronous Parallel Simulation.- Flecs, a Flexible Coupling Shell Application to Fluid-Structure Interaction.- New Scalability Frontiers in Ab Initio Electronic Structure Calculations Using the BG/L Supercomputer.- A PAPI Implementation for BlueGene.- Numerical Simulation of 3D Acoustic Logging.- An Improved Interval Global Optimization Method and Its Application to Price Management Problem.- Optimizing Neural Network Classifiers with ROOT on a Rocks Linux Cluster.- A Model of Small-Scale Turbulence for Use in the PPM Gas Dynamics Scheme.- Mapping in Heterogeneous Systems with Heuristic Methods.- The parXXL Environment: Scalable Fine Grained Development for Large Coarse Grained Platforms.- Performance Analysis of Two Parallel Game-Tree Search Applications.- Implementation of a Black-Box Global Optimization Algorithm with a Parallel Branch and Bound Template.- Parallelization Techniques for Tabu Search.- TreeP: A Self-reconfigurable Topology for Unstructured P2P Systems.- A Middleware for Job Distribution in Peer-to-Peer Networks.- Mobile Agents Self-optimization with MAWeS.- Performance Impact of Resource Conflicts on Chip Multi-processor Servers.- An Implementation of Parallel 1-D FFT Using SSE3 Instructions on Dual-Core Processors.