Combinatorial Pattern Matching

Probabilistic analysis of generalized suffix trees.- A language approach to string searching evaluation.- Pattern matching with mismatches: A probabilistic analysis and a randomized algorithm.- Fast multiple keyword searching.- Heaviest increasing/common subsequence problems.- Approximate regular expression pattern matching with concave gap penalties.- Matrix longest common subsequence problem, duality and hilbert bases.- From regular expressions to DFA's using compressed NFA's.- Identifying periodic occurrences of a template with applications to protein structure.- Edit distance for genome comparison based on non-local operations.- 3-D substructure matching in protein Molecules.- Fast serial and parallel algorithms for approximate tree matching with VLDC's (Extended Abstract).- Grammatical tree matching.- Theoretical and empirical comparisons of approximate string matching algorithms.- Fast and practical approximate string matching.- DZ A text compression algorithm for natural languages.- Multiple alignment with guaranteed error bounds and communication cost.- Two algorithms for the longest common subsequence of three (or more) strings.- Color Set Size problem with applications to string matching.- Computing display conflicts in string and circular string visualization.- Efficient randomized dictionary matching algorithms.- Dynamic dictionary matching with failure functions.