Data Analysis for Omic Sciences: Methods and Applications

Volume Editor Preface Roma Tauler, Carmen Bedia and Joaquim Jaumot 1. Introduction to the data analysis relevance in the omics era Roma Tauler, Carmen Bedia and Joaquim Jaumot 2. Omics experimental design and data acquisition Carmen Bedia 3. Microarrays data analysis Alex Sanchez-Pla 4. Analysis of High-Throughput RNA Sequencing Data Anna Esteve-Codina 5. Analysis of High-Throughput DNA Bisulfite Sequencing Data Simon Charles Heath 6. Data quality assessment in untargeted LC-MS metabolomic Julia Kuligowski, Guillermo Quintas, Angel Sanchez-Illana and Jose David Piñeiro-Ramos 7. Data normalization and scaling: consequences for the analysis in omics sciences Jan Walach, Peter Filzmoser and Karel Hron 8. Metabolomics data preprocessing: From raw data to features for statistical analysis Ibrahim Karaman and Rui Climaco Pinto 9. Exploratory data analysis and data decompositions Ivana Stanimirova and Michal Daszykowski 10. Chemometric methods for classification and feature selection Federico Marini and Marina Cocchi 11. Advanced statistical multivariate data analysis Jasper Engel and Jeroen Jansen 12. Analysis and interpretation of mass spectrometry imaging datasets Benjamin Bowen 13. Metabolomics tools for data analysis Matej Oresic, Alex Dickens, Tuulia Hyötyläinen, Santosh Lamichhane and Partho Sen 14. Metabolite identification and annotation C. Barbas, Joanna Godzien and Alberto Gil de la Fuente 15. Multi-omic data integration and analysis via model-driven approaches Igor Marín de Mas 16. Integration of metabolomic data from multiple analytical platforms: Toward an extensive coverage of the metabolome Julien Boccard and Serge Rudaz 17. Multiomics data integration in time series experiments Ana Conesa and Sonia Tarazona 18. Metabolomics applications in environmental research Carmen Bedia 19. Environmental genomics Carlos Barata and Benjamín Piña 20. Transcriptomics and metabolomics systems biology of health and disease Antonio Checa, Jose Fernández Navarro and