Quantitative Proteomics by Mass Spectrometry

IncreasedDepth and Breadth of Plasma Protein Quantitation via Two Dimensional LiquidChromatography/Multiple Reaction Monitoring-Mass Spectrometry with LabeledPeptide Standards.- QuantitativeAnalysis of the Wirt5-Regulated Lysine Succinylation Proteome in MammalianCells.- Determiningthe Composition and Stability of Protein Complexes Using an Integrated Label-Freeand Stable Isotope Labeling Strategy.- Label-FreeQuantitation for Clinical Proteomics.- ProteogenomicMethods to Improve Genome Annotation.- MassSpectrometry-Based Quantitative O-GlcNAcomic Analysis.- Isolating andQuantifying Plasma HDL Proteins by Sequential Density GradientUltracentrifugation and Targeted Proteomics.- A Method forLabel-Free Differential Top-Down Proteomics.- Multiplexed Immunoaffinity Enrichment ofPeptides with Anti-Peptide Antibodies and Quantification by Stable IsotopeDilution Multiple Reaction Monitoring Mass Spectrometry.- HighThroughput Quantitative Proteomics Enabled by Mass Defect-Based 12-Plex DiLeuIsobaric Tags.- IsotopicN, N-Dimethyl Leucine (iDiLeu) for Absolute Quantification of Peptides Using aStandard Curve Approach.- SelectingOptimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins asAnalytical Standards.- Usingthe CPTAC Assay Portal to Identify and Implement Highly Characterized TargetedProteomics Assays.- Large-Scaleand Deep Quantitative Proteome Profiling Using Isobaric Lableing Coupled withTwo-Dimensional LC-MS/MS.- Multipleand Selective Reaction Monitoring Using Triple Quadrupole Mass Spectrometer:Pre-Clinical Large Cohort Analysis.- Methodsfor SWATH(TM): Data Independent Acquisition on TripleTOF Mass Spectrometers.- Measurementof Phosphorylated Peptides with Absolute Quantification.- Proteomic Analysis of Protein Turnover by Metabolic Whole Rodent Pulse-Chase Isotopic Labeling and Shotgun Mass Spectrometry Analysis.