Combinatorial Pattern Matching

Algorithms for Forest Pattern Matching.- Affine Image Matching Is Uniform -Complete.- Old and New in Stringology.- Small-Space 2D Compressed Dictionary Matching.- Bidirectional Search in a String with Wavelet Trees.- A Minimal Periods Algorithm with Applications.- The Property Suffix Tree with Dynamic Properties.- Approximate All-Pairs Suffix/Prefix Overlaps.- Succinct Dictionary Matching with No Slowdown.- Pseudo-realtime Pattern Matching: Closing the Gap.- Breakpoint Distance and PQ-Trees.- On the Parameterized Complexity of Some Optimization Problems Related to Multiple-Interval Graphs.- Succinct Representations of Separable Graphs.- Implicit Hitting Set Problems and Multi-genome Alignment.- Bounds on the Minimum Mosaic of Population Sequences under Recombination.- The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection.- Phylogeny- and Parsimony-Based Haplotype Inference with Constraints.- Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks.- Mod/Resc Parsimony Inference.- Extended Islands of Tractability for Parsimony Haplotyping.- Sampled Longest Common Prefix Array.- Verifying a Parameterized Border Array in O(n 1.5) Time.- Cover Array String Reconstruction.- Compression, Indexing, and Retrieval for Massive String Data.- Building the Minimal Automaton of A X in Linear Time, When X Is of Bounded Cardinality.- A Compact Representation of Nondeterministic (Suffix) Automata for the Bit-Parallel Approach.- Algorithms for Three Versions of the Shortest Common Superstring Problem.- Finding Optimal Alignment and Consensus of Circular Strings.- Optimizing Restriction Site Placement for Synthetic Genomes.- Extension and Faster Implementation of the GRP Transform for Lossless Compression.- Parallel and Distributed Compressed Indexes.