Computational studies of RNA and DNA

- Basics of Nucleic Acid Structure:Concepts, Tools, and Archives

- Using Amber to simulate DNA and RNA

- Theoretical Studies of Nucleic Acids and Nucleic Acid-Protein Complexes Using CHARMM

- Continuum Solvent Models to Study the Structure and Dynamics of Nucleic Acids and Complexes With Ligands

- Data Mining of Molecular Dynamic Trajectories of Nucleic Acids

- Enhanced Sampling Methods for Atomistic Simulation Of Nucleic Acids

- Modeling DNA Deformation

- Molecular Dynamics Simulations and Free Energy Calculations on Protein-Nucleic Acid Complexes

- DNA Simulation Benchmarks as Revealed by X-Ray Structures

- RNA: The Cousin Left Behind Becomes a Star

- Molecular dynamics simulations of RNA systems: importance of the initial conditions- RNA molecular dynamics

- Molecular dynamics simulations of nucleic acids: MD simulations of G-DNA and functional RNAs

- Using Computer Simulations to Study Decoding by the Ribosome

- Base stacking and base pairing: Advanced quantum chemical studies

- Interaction of Metal Cations With Nucleic Acids and their Building Units: A comprehensive view from quantum chemical calculations

- Proton transfer in DNA base pairs: Potential mutagenic processes

- Comparative Study of Quantum Mechanical Methods Related to Nucleic Acid Bases: Electronic Spectra, Excited State Structures and Interactions

- Substituent Effects on Hydrogen Bonds in DNA:A Kohn-Sham DFT approach

- Computational modeling of charge transfer in DNA

- Quantum chemical calculations of NMR parameters

- The Importance of Entropic Factors In DNA Behaviour: Insights From Simulations

- Sequence-dependent harmonic deformability of nucleic acids inferred from atomistic molecular dynamics

- Simulation of equilibrium and dynamic properties of large DNA molecules

- Chromatin Simulations: From DNA to chromatin fibers