PCR Primer Design

PCR primer design. ContentsPart I. Basic Principles and software for PCR primer designChapter 1. Physical Principles and Visual-OMP Software for Optimal PCRDesignChapter 2. Oligo 7 Primer Analysis SoftwareChapter 3. Selection for 3' end triplets for polymerase chain reactionprimersChapter 4. The reference point method in primer designChapter 5. PCR primer design using statistical modelingChapter 6. Developing a Statistical Model for Primer DesignPart II. Genome scale PCR primer designChapter 7. GST-PRIME: An Algorithm for Genome-Wide Primer DesignChapter 8. Genome-Scale Probe and Primer Design with PRIMEGENSRepeat masking for PCR primer designChapter 9. SNPbox: web-based high-throughput primer design with an eyefor repetitive sequences.Chapter 10. Fast masking of repeated primer binding sites in eukaryoticgenomesMultiplex PCR primer designChapter 11. Degenerate Primer Design: Theoretical Analysis and theHYDEN programChapter 12. An Iterative Method for Selecting Degenerate Multiplex PCRPrimersChapter 13. Primer-design for multiplexed genotypingChapter 14. MultiPLX: automatic grouping and evaluation of PCR primersChapter 15. MultiPrimer: A system for Microarray PCR Primer DesignAllele-specific PCRChapter 16. Modified oligonucleotides as tools for allele-specificamplificationChapter 17. AlleleID: A Pathogen Detection and Identification SystemLong PCR primer designChapter 18. GenoFrag, a software package for the design of primersdedicated to whole genome scanning by LR-PCR.DNA methylation mappingChapter 19. Designing PCR primer for DNA methylation mappingChapter 20. BiSearch: ePCR tool for native or bisulfite treated genomictemplate.Chapter 21. Graphical design of primers with PerlPrimer