Protein Dynamics

Monitoring Side-Chain Dynamics of Proteins Using 2H Relaxation.- CPMG Relaxation Dispersion.- Confocal Single-Molecule FRET for Protein Conformational Dynamics.- Protein Structural Dynamics Revealed by Site-directed Spin Labeling and Multifrequency EPR.- Probing Backbone Dynamics With Hydrogen/Deuterium Exchange Mass Spectrometry.- Carbon-Deuterium Bonds as Non-perturbative Infrared Probes of Protein Dynamics, Electrostatics, Heterogeneity, and Folding.- Balancing Bond, Nonbond and G -like Terms in Coarse Grain Simulations of Conformational Dynamics.- Tutorial on Building Markov State Models with MSMBuilder and Coarse-graining them with BACE.- Analysis of Protein Conformational Transitions Using Elastic Network Model.- Geometric Simulation of Flexible Motion in Proteins.- Principal Component Analysis: A Method for Determining the Essential Dynamics of Proteins.- A Case Study Comparing Quantitative Stability/Flexibility Relationships Across Five Metallo-beta-Lactamases Highlighting Differences within NDM-1.- Towards Comprehensive Analysis of Protein Family Quantitative Stability/Flexibility Relationships using Homology Models.- Using the COREX/BEST Server to Model the Native State Ensemble.- Morphing Methods to Visualize Coarse-grained Protein Dynamics.